Index B | C | G | L | M | N | P | R | T | V | W B blocks C columns connections, [1] G generators L Layermesh layers M MULgraph geometry block mappings, [1] block names, [1] block ordering checking columns connections diagnostics emptying exporting, [1], [2], [3], [4] file format files fitting data fitting surface from GMSH from Layermesh Layermesh conversion layers meshio grid MINC arrays nodes optimizing permeability directions plotting, [1], [2] quadtree, [1], [2] reading, [1] rectangular, [1] refining, [1] rotating searching, [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11] snapping, [1] tilting translating Voronoi wells writing N nodes P Python 3.x dictionaries importing libraries lists matplotlib meshio numpy objects running scipy scripts sets tuples tutorials PyTOUGH installing license testing branch unit tests R rocktypes T thermodynamics IAPWS-97 IFC-67 TOUGH2, [1] AUTOUGH2, [1] TOUGH+ TOUGH2-MP TOUGHREACT TOUGH2 data files, [1] COFT converting, [1] FOFT generators GOFT grid JSON reading running simulation parameters transferring writing TOUGH2 grids block mappings blocks checking cleaning rocktypes connections embedding emptying flux matrices from MULgraph geometry initial conditions MINC radial reordering rocktypes sorting rocktypes VTK TOUGH2 initial conditions TOUGH2 listing files, [1] navigation short output tables, [1] time histories VTK TOUGH3 V Visualization Tool Kit (VTK) W wells